POST sequence/region/:species

{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }
        

use strict;
use warnings;
 
use HTTP::Tiny;
 
my $http = HTTP::Tiny->new();
 
my $server = 'http://jan2020.rest.ensembl.org';
my $ext = '/sequence/region/human';
my $response = $http->request('POST', $server.$ext, {
  headers => { 
  	'Content-type' => 'application/json',
  	'Accept' => 'application/json'
  },
  content => '{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }'
});
 
die "Failed!\n" unless $response->{success};
 
 
use JSON;
use Data::Dumper;
if(length $response->{content}) {
  my $hash = decode_json($response->{content});
  local $Data::Dumper::Terse = 1;
  local $Data::Dumper::Indent = 1;
  print Dumper $hash;
  print "\n";
}
 

import requests, sys
 
server = "http://jan2020.rest.ensembl.org"
ext = "/sequence/region/human"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }')
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print repr(decoded)
 

import requests, sys
 
server = "http://jan2020.rest.ensembl.org"
ext = "/sequence/region/human"
headers={ "Content-Type" : "application/json", "Accept" : "application/json"}
r = requests.post(server+ext, headers=headers, data='{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }')
 
if not r.ok:
  r.raise_for_status()
  sys.exit()
 
decoded = r.json()
print(repr(decoded))
 

require 'net/http'
require 'uri'
 
server='http://jan2020.rest.ensembl.org'
path = '/sequence/region/human'
 
url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)
 
request = Net::HTTP::Post.new(path, {'Content-Type' => 'application/json', 'Accept' => 'application/json'})
request.body = '{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }'
 
response = http.request(request)
 
if response.code != "200"
  puts "Invalid response: #{response.code}"
  puts response.body
  exit
end
 
 
require 'rubygems'
require 'json'
require 'yaml'
 
result = JSON.parse(response.body)
puts YAML::dump(result)
 

import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;
import java.io.DataOutputStream;
 
 
public class EnsemblRest {
 
  public static void main(String[] args) throws Exception {
    String server = "http://jan2020.rest.ensembl.org";
    String ext = "/sequence/region/human";
    URL url = new URL(server + ext);
 
    URLConnection connection = url.openConnection();
    HttpURLConnection httpConnection = (HttpURLConnection)connection;
    
    String postBody = "{ \"regions\" : [\"X:1000000..1000100:1\", \"ABBA01004489.1:1..100\"] }";
    httpConnection.setRequestMethod("POST");
    httpConnection.setRequestProperty("Content-Type", "application/json");
    httpConnection.setRequestProperty("Accept", "application/json");
    httpConnection.setRequestProperty("Content-Length", Integer.toString(postBody.getBytes().length));
    httpConnection.setUseCaches(false);
    httpConnection.setDoInput(true);
    httpConnection.setDoOutput(true);
 
    DataOutputStream wr = new DataOutputStream(httpConnection.getOutputStream());
    wr.writeBytes(postBody);
    wr.flush();
    wr.close();
    
 
    InputStream response = connection.getInputStream();
    int responseCode = httpConnection.getResponseCode();
 
    if(responseCode != 200) {
      throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
    }
 
    String output;
    Reader reader = null;
    try {
      reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
      StringBuilder builder = new StringBuilder();
      char[] buffer = new char[8192];
      int read;
      while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
        builder.append(buffer, 0, read);
      }
      output = builder.toString();
    } 
    finally {
        if (reader != null) try {
          reader.close(); 
        } catch (IOException logOrIgnore) {
          logOrIgnore.printStackTrace();
        }
    }
 
    System.out.println(output);
  }
}
 

library(httr)
library(jsonlite)
library(xml2)
 
server <- "http://jan2020.rest.ensembl.org"
ext <- "/sequence/region/human"
r <- POST(paste(server, ext, sep = ""), content_type("application/json"), accept("application/json"), body = '{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }')
 
stop_for_status(r)
 
# use this if you get a simple nested list back, otherwise inspect its structure
# head(data.frame(t(sapply(content(r),c))))
head(fromJSON(toJSON(content(r))))
 

curl 'http://jan2020.rest.ensembl.org/sequence/region/human' -H 'Content-type:application/json' \
-H 'Accept:application/json' -X POST -d '{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }'
 

wget -q --header='Content-type:application/json' --header='Accept:application/json' \
--post-data='{ "regions" : ["X:1000000..1000100:1", "ABBA01004489.1:1..100"] }' \
'http://jan2020.rest.ensembl.org/sequence/region/human'  -O -